/*
 * SeqAlignParams.h
 *
 *  Created on: 17-10-2011
 *      Author: pawel
 */

#ifndef SEQALIGNPARAMS_H_
#define SEQALIGNPARAMS_H_

#include"../algorithms.h"
/*
 * Additional sequence params
 */
class seqAlignParams{
private:
	/*
	 * Bounds of dynamic programming matrix
	 */
	bounds boundsStruct;
public:
	/*
	 * Constructor
	 */
	seqAlignParams(bounds *boundsPtr);
	/*
	 * Copy constructor
	 */
	seqAlignParams(const seqAlignParams &obj);
	/**
	 * @return reference to boundsStruct
	 */
	bounds& getBoundsRef();

};


#endif /* SEQALIGNPARAMS_H_ */
